PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_6DC75B590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 381aa MW: 41332.9 Da PI: 7.3725 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 101 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Traes_6DL_6DC75B590.1 101 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 152 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.337 | 2 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-6 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-9 | 30 | 68 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-9 | 31 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 101 | 162 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-10 | 101 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.61E-24 | 101 | 162 | No hit | No description |
SMART | SM00380 | 8.1E-34 | 102 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-18 | 102 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 102 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MCYLSIISRV ASTLYMTASP SPLGMILYRP RQSVYLGGYD KEDKAARAYD LAALKYWGTT 60 TTTNFPINTY EKEVDEMKHM TRQEYIAYLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG 120 RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKTIL ESSTLPVGGA 180 ARRLKEAADH PEAGATIWRA GMDGAIISQL TDVGMGAYAS YHHGWPTIAF QQPSPLSVHY 240 PYVAQPPRGW CKPEQDATVA TQSLQDLQQL HLGTAAHNYF QASSSSTVYN GGGVGGYQQG 300 TGGNAFLMPA STVVDEQGHS STAANQGSTC SYGDEEGKLN LGYDAMAMAS TGADPYAAAS 360 TVSIARANGY SNNWSSPFSG M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955732 | 0.0 | EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183326.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A453P371 | 0.0 | A0A453P371_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_6DC75B590.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-85 | AP2 family protein |
Publications ? help Back to Top | |||
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