PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_67FD04DA0.1 | ||||||||
Common Name | MYB73 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 70aa MW: 8117.29 Da PI: 10.5973 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 3 | 28 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++ ++ g+ R++k+c++rw +yl Traes_6DL_67FD04DA0.1 3 NWRALPKQAGLLRCGKSCRLRWINYL 28 7*********99************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 34 | 70 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg++T eE+e +++++++lG++ W+tIa++++ gRt+++ Traes_6DL_67FD04DA0.1 34 RGNFTSEEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNE 70 89********************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.249 | 1 | 28 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 2 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-5 | 3 | 28 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.02E-18 | 15 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.082 | 29 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0011 | 33 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-13 | 34 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-8 | 36 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 42 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
HSNWRALPKQ AGLLRCGKSC RLRWINYLRP DIKRGNFTSE EEEAIIQLHA MLGNRWSTIA 60 ARLPGRTDNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-16 | 15 | 69 | 40 | 94 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN969051 | 1e-114 | JN969051.1 Triticum aestivum MYB73 (MYB73) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169006.1 | 4e-46 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 5e-41 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
Swissprot | Q9LTC4 | 6e-41 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A446WET8 | 6e-45 | A0A446WET8_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_54D562BC2.1 | 3e-45 | (Triticum aestivum) | ||||
STRING | Traes_6AL_E1D3D8DAA1.1 | 4e-45 | (Triticum aestivum) | ||||
STRING | Traes_6DL_67FD04DA0.1 | 2e-45 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-43 | myb domain protein 15 |