PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_62A15AED6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 308aa    MW: 32407.8 Da    PI: 8.057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_62A15AED6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11244289655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri  ++ +L++l+P+     +k  s +++L +Ave+Ik Lq
  Traes_6DL_62A15AED6.2 244 SIAERERRTRISYKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 289
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.884238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-15241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-12242293No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14243301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8244289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRRFLPAGVG EPSSSSSSGP HGKHEGSEAA AAGGGLRYGG GDISLGRGND LLHGQFRGGE  60
GEMKDDGADM LARHSSSPAG FFSNLMVDDG YHGSRGAGVA GGSSGGEAHR HASSSTKMKS  120
QLSFTAGGQQ TTAHLSRISE GASLFPSADA VRAAAHSGSE HPVSRSFSAS GSSGGFSIVG  180
PWDESREIIG TLDLGGYESQ FSGMASSSSL ELAGMDKYMQ AQQQQDQVAF KVRAKRGCAT  240
HPRSIAERER RTRISYKLRK LQDLVPNMDK QTSTSDMLDL AVEHIKGLQS QLQAMKHEQD  300
KCTCCNKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499540.0AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165844.10.0transcription factor bHLH128-like
SwissprotQ8H1023e-50BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A3B6QF100.0A0A3B6QF10_WHEAT; Uncharacterized protein
STRINGTraes_6DL_62A15AED6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]