PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_552D41920.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 266aa    MW: 31216.7 Da    PI: 6.582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_552D41920.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07117159145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            r +W++ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_6DL_552D41920.2 117 RAKWSKSDTDLFYQGLHQFGSD-FAMIQQLFP-DKSRDQVRQKFK 159
                            569*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.23E-10108165IPR009057Homeodomain-like
PfamPF159633.3E-25110190No hitNo description
PROSITE profilePS512939.554115166IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.9E-4115163IPR009057Homeodomain-like
SMARTSM007176.6E-8116164IPR001005SANT/Myb domain
CDDcd001673.19E-5119160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKDTLTEQPE KKLTHRIRQK RAKVSEVKTL LEKPDHEIDR MKLSVMHIRL LHEARERIKS  60
KTIPSGPSSF NQSSSQFGDT NSFDPFEENY DNGRRENHMV ENATKLNYHS YMNKQTRAKW  120
SKSDTDLFYQ GLHQFGSDFA MIQQLFPDKS RDQVRQKFKT EEKKHPMQVH DAILHRSRDN  180
LYLKQVIKQL NIEDLQRDIN STHKQVVASI EGDTGNEHAL QDFMEEENDS NWSAKELSAR  240
QSEVREVEHV AGNADDGLDL DVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500790.0AK250079.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66i09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174327.10.0transcription factor TFIIIB component B''-like isoform X1
RefseqXP_020174329.10.0transcription factor TFIIIB component B''-like isoform X1
TrEMBLA0A3B6QL430.0A0A3B6QL43_WHEAT; Uncharacterized protein
TrEMBLA0A453PPQ90.0A0A453PPQ9_AEGTS; Uncharacterized protein
STRINGTraes_6DL_552D41920.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-33MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]