PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_52A25BEA4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 222aa MW: 24765.4 Da PI: 10.6907 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.4 | 1.5e-19 | 12 | 75 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ l+v+++r+ Traes_6DL_52A25BEA4.1 12 QTVIAKDVHGTAWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL--RGDGGDLHVGIRRA 75 38999*********************************************..3488999*****97 PP | |||||||
2 | Auxin_resp | 115.4 | 5.1e-38 | 119 | 202 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ ++p+rWp+S+Wr+L+ Traes_6DL_52A25BEA4.1 119 AARLAGSGQPFEVVYFPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVAHPTRWPQSPWRLLQ 202 6778899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-25 | 1 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.252 | 1 | 76 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-4 | 1 | 76 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.28E-18 | 3 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-16 | 12 | 74 | No hit | No description |
Pfam | PF02362 | 4.0E-17 | 12 | 75 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-32 | 119 | 202 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
PRLDYAADPP VQTVIAKDVH GTAWKFRHIY RGTPRRHLLT TGWSAFVNQK KLVAGDSIVF 60 LRGDGGDLHV GIRRAKRGFC GAEEGSLSLT GWGRYSGPMR GNASPCTRGK VRAEDVVEAA 120 RLAGSGQPFE VVYFPRASTP EFCVRAAAVR AAMRVQWCPG MRFKMAFETE DSSRISWFMG 180 TVAGVQVAHP TRWPQSPWRL LQVTWDEPDL LQNVKRVSPW LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-50 | 1 | 220 | 185 | 385 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243230 | 1e-117 | AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164996.1 | 1e-160 | auxin response factor 8-like | ||||
Swissprot | Q6K223 | 1e-129 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A3B6QFK5 | 1e-158 | A0A3B6QFK5_WHEAT; Auxin response factor | ||||
TrEMBL | A0A446WF48 | 1e-158 | A0A446WF48_TRITD; Auxin response factor | ||||
STRING | Traes_6DL_52A25BEA4.1 | 1e-163 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-104 | auxin response factor 16 |
Publications ? help Back to Top | |||
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