PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_4C3F04219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 414aa MW: 45263.9 Da PI: 7.6819 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 1e-24 | 93 | 136 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Traes_6DL_4C3F04219.1 93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 136 79***************************************998 PP | |||||||
2 | QLQ | 62.7 | 9.8e-22 | 21 | 56 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a+++P+P++Ll+++++ Traes_6DL_4C3F04219.1 21 PFTATQWQELEHQALIYKYMASGVPIPSDLLLPLRR 56 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-11 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-15 | 21 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.425 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 93 | 137 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-20 | 94 | 136 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL 60 DSALATSPSL AFPPQAALGW GCFGMGFGRK AEDPEPGRCR RTDGKKWRCS KEAYPDSKYC 120 EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVHSA VNVATTTSSP APSYHRHAAA 180 THDTTPYHAL YGGPYSSAGR QQHASAYHHA AQVSPFHLHL DTTHPHPPPS YYSSMDHSKD 240 SYAYGHSVKE VHGGGEHAFF SSDVTTDRDH HHHHHQHQHH ASAGGNGQWQ FKQLGGMEPK 300 QHNPTSLFPG CGGYGNNAAY AIDLSSKEED EEKERRQQQQ HCFLLGADLR LDKPSSGHGD 360 SADQKPLRPF FDEWPHEKTG SKGSWMGLEG ETQLSISIAN ELPITTTSRY HHGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353813 | 0.0 | AK353813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156076.1 | 0.0 | growth-regulating factor 1-like isoform X1 | ||||
Swissprot | Q6AWY8 | 1e-170 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A453PRH3 | 0.0 | A0A453PRH3_AEGTS; Uncharacterized protein | ||||
TrEMBL | W5GW32 | 0.0 | W5GW32_WHEAT; Growth regulating factor 1-D1 | ||||
STRING | Traes_6DL_4C3F04219.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-46 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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