PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_359607E93.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 529aa    MW: 57496.8 Da    PI: 10.248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_359607E93.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.3e-30212308191
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  Traes_6DL_359607E93.1 212 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSR 299
                            89***************************955556888*************************************************6 PP

                            -.SS.SEE. CS
                     B3  85 d.gr.sefe 91 
                              g+  + +
  Traes_6DL_359607E93.1 300 GaGEaARHR 308
                            534444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-41204318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29209317IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-24210299No hitNo description
SMARTSM010194.7E-21212313IPR003340B3 DNA binding domain
PfamPF023621.8E-27212315IPR003340B3 DNA binding domain
PROSITE profilePS5086314.551212315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
NFLGRKTTHT RIHRWIPSLV VPNLHAIALL QPQCLFSSTR PSCWSRQKPA RGNKKKDPGL  60
LLSRSDPNNH WAARQRRKLF CSCLLLLKIW SSSSPLVGES GCRSNPREEV FKYTHMEFTA  120
TSSRFSKGEE EVEEEQEEAS MPREIPFMTA AAASSAAAPS ASASASTPAS ASASASPSGS  180
SPHFRSGDDA GASGSGGGGG SVAEAVEKEH MFDKVVTPSD VGKLNRLVIP KQYAEKYFPL  240
DSAANEKGLL LNFEDSAGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLD AGDTVSFSRG  300
AGEAARHRLF IDWKRRADTR DPLRLPRLPL QMPLTSHYSP WGLGAGGRGF FMPPSPPATL  360
YEHRLRQGFD FRGMNPSYPT MGRQVILFGS AARMPPHTPA PLLVPRPPPP LHFTVQQQGS  420
GAGVSVTAGS PVVLDSVPVI ESPTTATKKR VRLFGVNLDN PQHPGDGGGE SSNYGSALPL  480
QMPASAWRPR DHTLRLLEFP SHGAGAEASS PSSSSSSKRE AHSGLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-592073163113B3 domain-containing transcription factor NGA1
5os9_B3e-592073163113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155376.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-152Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A3B6QIN70.0A0A3B6QIN7_WHEAT; Uncharacterized protein
TrEMBLA0A453PAF80.0A0A453PAF8_AEGTS; Uncharacterized protein
STRINGTraes_6DL_359607E93.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-56B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]