PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_31D678054.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 106aa    MW: 11541.2 Da    PI: 11.3427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_31D678054.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-194190255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Traes_6DL_31D678054.1 41 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 90
                           69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-2940100No hitNo description
PfamPF008471.2E-114189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-344199IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-214199IPR016177DNA-binding domain
PROSITE profilePS5103221.0224198IPR001471AP2/ERF domain
SMARTSM003808.4E-3841104IPR001471AP2/ERF domain
PRINTSPR003671.4E-114253IPR001471AP2/ERF domain
PRINTSPR003671.4E-116480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MHSSIIRSTK TKTEACAGPF LVAAIGGGSV AAAQMARPQQ RYRGVRQRHW GSWVSEIRHP  60
LLKTRIWLGT FETAEDAARA YDEAARIMCG QRARTNFPAV AAAGSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1840105470ATERF1
3gcc_A4e-1840105470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681128e-72EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164328.15e-73ethylene-responsive transcription factor ERF003-like isoform X2
SwissprotQ94AW52e-41ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A453PWW33e-57A0A453PWW3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_31D678054.13e-72(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-32ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]