PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_2F3586557.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 538aa    MW: 59246.2 Da    PI: 4.9377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_2F3586557.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.32.2e-30561991128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                            lp+G++F+P+d el+ e+L++k+          +  +e+i++v+    i++++P++Lp  ++++ ++ +fF++ +++y  g+rk+r  
  Traes_6DL_2F3586557.2  56 LPAGVKFDPSDLELL-EHLEQKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSAHFFHSISNAYGCGQRKRRRi 139
                            799************.99****876554555332..333444422344**********.556677899*****************965 PP

                    NAM  78 ........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                                     ++ +W++tgk+k+v++ +g  +g kk+Lv+ykg++  g+  ktdWvmh+y+l
  Traes_6DL_2F3586557.2 140 snsdrttsDEHVRWHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 199
                            7888865444889************.999***********9987766555*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3641218IPR003441NAC domain
PROSITE profilePS5100530.86756218IPR003441NAC domain
PfamPF023655.1E-1357199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MARSWLITCR GVAKKVRNAH CSNRQISEVG AEACRECPNC KHIIDNSDVA IQWPGLPAGV  60
KFDPSDLELL EHLEQKIGVG GSKPHMFIDE FIPTVENDAG ICYSHPENLP GTNKDGSSAH  120
FFHSISNAYG CGQRKRRRIS NSDRTTSDEH VRWHKTGKSK PVYDNGVMKG WKKILVLYKG  180
SQTGGKPDKT DWVMHQYHLG VEENEKVGEF VVSKIFYQLK TRPVDKSEAE MANEESTAFT  240
ASICPKTPMT KIPPCRPKNS PCETEQNDPG QEEETVSLAE NAKNPAWCAL SSQPVEVALE  300
AGTCSLDKSL SHHEVLDSSN LENSTFDRPI LSQLMNETLN KNLCALHGLP DLHNVNLGTA  360
PTDLQITKGE NVSLVDDAEN TACCSLVSQD VEVTSPAGTS LVESLLHHEV SDLHSANLGT  420
PRDLQIAKEE SVSLMDEAEK WCGLASQAVD VASHAWTSLD ESLRCHEVLD SFDHEKSLTF  480
DRPIYSQGRD GGLENNLYSL NGLPDLQGVD LGTPIDDLQV AGLQFYSQES LGSWLERM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RKRRR
2134138KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743040.0AK374304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3060A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173041.10.0uncharacterized protein LOC109758588 isoform X1
TrEMBLA0A3B6QEH90.0A0A3B6QEH9_WHEAT; Uncharacterized protein
STRINGTraes_6DL_2F3586557.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-83NAC domain containing protein 44
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]