PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_29EF04226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 470aa MW: 49822 Da PI: 8.3115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.8e-15 | 119 | 167 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ + G+g +W + ++++g++R++k+c++rw++yl Traes_6DL_29EF04226.1 119 KGPWSPEEDAKLKAYIDENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 167 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.4 | 2.9e-12 | 174 | 216 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ Traes_6DL_29EF04226.1 174 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 216 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.946 | 114 | 167 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-25 | 117 | 214 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-11 | 118 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 119 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 120 | 174 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.56E-8 | 121 | 167 | No hit | No description |
PROSITE profile | PS51294 | 21.924 | 168 | 222 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-10 | 172 | 220 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-11 | 174 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 175 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.98E-7 | 176 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
RCPRDPGYKA PHITFLVSSQ THTPVTTPSP VVQHTSSRPS PTQLPTSIAA ASTARSSSVF 60 FDRADQLISD LFSGRLAVAV ASGGGRRGGE EVDRLRRPIP PHRAAMGRAP CCDKATVKKG 120 PWSPEEDAKL KAYIDENGTG GNWIALPQKI GLKRCGKSCR LRWLNYLRPN IKHGDFTEEE 180 EHIICSLYIS IGSRWSIIAA QLPGRTDNDI KNYWNTKLKK KLLGKRAPSR RLQRASQDAP 240 MPYSYLAAGG GGASSSGNAN GTTAALSSSA LERIQLHMRL QGLYSAFGCG ASNAPPQWPK 300 LEPPTDAVAM TTVSHGHSLA AADVVEAEQQ LNPSAGASYD MPVPGGFEER SASKLGFGSA 360 AGEAAGVAST VEMSSGSMVG GGFGYGHVDE LYDFLYSKQL AAAGAFQGGV PPLPELQCPD 420 GGAVVGADEK FSTWMASCDH YVPTTGGQQL QLQAGGNSMN LQDFVLGYDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 119 | 222 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186660.1 | 0.0 | transcription factor MYB36-like | ||||
TrEMBL | A0A453PUB6 | 0.0 | A0A453PUB6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_29EF04226.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-87 | myb domain protein 36 |
Publications ? help Back to Top | |||
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