PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_26DDCA106.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 277aa    MW: 30046.7 Da    PI: 6.0795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_26DDCA106.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS229.41.6e-70227691374
                   GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            l+f+++ta qa+l++++ +  +++HiiDfd++ G+QW++++q+La R+       p l++T+++s +s++  el+ t+++L++fA+ l
  Traes_6DL_26DDCA106.1   2 LQFANFTATQALLDEIACSaaSCIHIIDFDLGVGGQWASFMQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAADL 89 
                            89************988776699************************976544599******************************** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                            g+pfefn++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++fl+
  Traes_6DL_26DDCA106.1  90 GIPFEFNAV---SLDAFSPAELISPTgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVVAMDYGADRADLPFSQHFLH 167
                            ********8...99********666689********9777665...55555....********************************* PP

                   GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                            +++ ++ l+dsl+a  + +++ + k+E++l++++++++v  + +       ++ +Wr+ + +aGF+pvpls+ a++qa++ll++v+++
  Traes_6DL_26DDCA106.1 168 CFQSCMFLLDSLDAA-GIDADSACKIEKFLIQPRVEDAVLGRRKT-----DKAVSWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVR 249
                            ************888.7899*******************987776.....7889********************************** PP

                   GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                            g++ve++  +l+l+W++ +LvsvSaWr
  Traes_6DL_26DDCA106.1 250 GFHVEKRGVALTLYWQRGELVSVSAWR 276
                            **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.9931256IPR005202Transcription factor GRAS
PfamPF035145.6E-682276IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLQFANFTAT QALLDEIACS AASCIHIIDF DLGVGGQWAS FMQELAHRRG TGGVALPLLK  60
LTAFVSDASH HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS PTGDEIVAVS  120
LPVGCSARAP PLAVILRLVK QLGPKIVVAM DYGADRADLP FSQHFLHCFQ SCMFLLDSLD  180
AAGIDADSAC KIEKFLIQPR VEDAVLGRRK TDKAVSWRNV FAAAGFTPVP LSNLAEAQAD  240
CLLKRVQVRG FHVEKRGVAL TLYWQRGELV SVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-25327691375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.10.0scarecrow-like protein 6
TrEMBLM8BWU00.0M8BWU0_AEGTA; Uncharacterized protein
STRINGEMT262580.0(Aegilops tauschii)
STRINGTraes_6DL_26DDCA106.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-73GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]