PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_1ABE78799.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 303aa    MW: 33643.7 Da    PI: 6.9545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_1ABE78799.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.62.5e-49101471128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrF P+deelv++yL+ kv++++l+   +  + evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkat
  Traes_6DL_1ABE78799.1  10 LPPGFRFYPSDEELVCHYLHGKVANRRLSGGAAgtMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKAT 97 
                            79*************************76533334***************87788999****************************** PP

                    NAM  87 gkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd+ + s         +++ vg++ktLvfy+grap+g+kt Wvmhe+r+
  Traes_6DL_1ABE78799.1  98 GKDRVIRSPrssssrsgRTAIVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 147
                            *******99666555544445***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-587166IPR003441NAC domain
PROSITE profilePS5100556.03810166IPR003441NAC domain
PfamPF023652.5E-2711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANRRLSGG AAGTMVEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SRSGRTAIVG  120
MRKTLVFYRG RAPNGSKTCW VMHEFRIENP HSPPKEDWVL CRVFHKKKAD TEYTMDGEQE  180
IGSGMARSAA AVSGSCHDPD QYHHSPPAAL FPSLGAGGHP YQLTSCDHHH THGAAGVSLT  240
DVDPFVDMPQ LLSYDSILDF NQQLQGGGAA AGLRDGAGDQ CGGELMDLGL QVQEEHYNYN  300
SLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4711694168NO APICAL MERISTEM PROTEIN
1ut4_B2e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_A2e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_B2e-4711694168NO APICAL MERISTEM PROTEIN
3swm_A3e-4711697171NAC domain-containing protein 19
3swm_B3e-4711697171NAC domain-containing protein 19
3swm_C3e-4711697171NAC domain-containing protein 19
3swm_D3e-4711697171NAC domain-containing protein 19
3swp_A3e-4711697171NAC domain-containing protein 19
3swp_B3e-4711697171NAC domain-containing protein 19
3swp_C3e-4711697171NAC domain-containing protein 19
3swp_D3e-4711697171NAC domain-containing protein 19
4dul_A2e-4711694168NAC domain-containing protein 19
4dul_B2e-4711694168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172962.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6QK850.0A0A3B6QK85_WHEAT; Uncharacterized protein
STRINGTraes_6DL_1ABE78799.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-75NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]