PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_0A41F917E.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 999aa MW: 110110 Da PI: 9.1164

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_0A41F917E.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	309	328	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C++ H+ Traes_6DL_0A41F917E.2 309 CHEFVK-GRCSRGASCRYVHD 328 9***.***********7 PP
2	zf-CCCH	24.2	5.8e-08	365	386	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H Traes_6DL_0A41F917E.2 365 KRPCKFFAE-GRCRRGETCPYLH 386 689****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.032	221	245	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.906	224	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	303	330	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.08	306	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	359	388	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.831	362	389	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-6	362	388	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.77E-7	363	387	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	365	386	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEAHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 FPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYA RSRQPRGHFD EGTWERSEPR 300 RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMGPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENT GSQHTARSDT GYGYKSRQLE DAGRDQYQII PQEDFGSQGR 480 NKPEMSASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLSMQTGI HAANLLGGQS 540 LSQIAQSQDA VPQTSGAPIH PVTSQQQDAT SVLPFNIQPH ESNFSLHPNR QDQFSNFSLH 600 PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHSQHSYTL GSQALPAFNG HNFSVAGQVP 660 QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQARSQAL QGLSGVPGQD 720 TGTQSIQNAH NFQPVAPPYM QNRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS 780 LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQHKAGTTQ LAQQQQAGMT 840 QLAQSEQQAP QQTLPAPSTA VGSSNGNNPA QSIGQTAATS VVTAPQAAEN KKVEAKAKDN 900 DGEQDGDKNK KGNKEESKAL KMFKLALADF VKDALKPTWK EGQLTREVHK TIVKKVVDKV 960 TSTVENTPPT KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEAHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR  180
SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR  240
FPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYA RSRQPRGHFD EGTWERSEPR  300
RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH  360
RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMGPGASD EPPKYSGGRT PRGNYSNWGE  420
ETNATHAGSH ILSRDDRENT GSQHTARSDT GYGYKSRQLE DAGRDQYQII PQEDFGSQGR  480
NKPEMSASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLSMQTGI HAANLLGGQS  540
LSQIAQSQDA VPQTSGAPIH PVTSQQQDAT SVLPFNIQPH ESNFSLHPNR QDQFSNFSLH  600
PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHSQHSYTL GSQALPAFNG HNFSVAGQVP  660
QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQARSQAL QGLSGVPGQD  720
TGTQSIQNAH NFQPVAPPYM QNRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS  780
LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQHKAGTTQ LAQQQQAGMT  840
QLAQSEQQAP QQTLPAPSTA VGSSNGNNPA QSIGQTAATS VVTAPQAAEN KKVEAKAKDN  900
DGEQDGDKNK KGNKEESKAL KMFKLALADF VKDALKPTWK EGQLTREVHK TIVKKVVDKV  960
TSTVENTPPT KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	199	RVRGRSRSRSR
2	191	199	RGRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249720	0.0	AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174956.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	A0A3B6QMC8	0.0	A0A3B6QMC8_WHEAT; Uncharacterized protein
STRING	Traes_6DL_0A41F917E.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]