PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_04EAF750D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 318aa    MW: 33992.2 Da    PI: 8.5421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_04EAF750D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09160207455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Traes_6DL_04EAF750D.1 160 SHSLAERVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 207
                            8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-16154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-10154211No hitNo description
PROSITE profilePS5088815.504156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAHCGGGPGP AAPREASSVE SHFQGLLDDD DKYRALCGAF GYLQQQEWPD LSGACYAAFG  60
APPPPGTSNG AGNSFSCSGS ASSGGGSTKR KPDAYVDAKD DCKRPRGKQQ LCDPDEAGAA  120
AKGRPEKAKA CARKKPEPAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ  180
ELVPGCDKVT GKAGMLDEII NYVQSLQKQV EFLSMKIAAS NPVVNFNIVD DLFGGRRMNQ  240
ACGPSMTTLP MHQGQLDPSC LQMSSATMQQ MQQPAAGFGQ DMLVNNPYPA AQSAPPSAAR  300
LPHRCRCQPP RPSNHAST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602380.0AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606200.0AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200434.10.0transcription factor bHLH137-like
TrEMBLA0A3B6QJ350.0A0A3B6QJ35_WHEAT; Uncharacterized protein
TrEMBLA0A453PD380.0A0A453PD38_AEGTS; Uncharacterized protein
TrEMBLA0A453PD420.0A0A453PD42_AEGTS; Uncharacterized protein
STRINGTraes_6DL_04EAF750D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.19e-38bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]