PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_FE119B025.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 184aa    MW: 20804.1 Da    PI: 5.4063
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_FE119B025.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.1e-081211542154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp+++++++L +++gL+ +q+ +WF N+R +
  Traes_6BS_FE119B025.1 121 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 154
                            569*****************************87 PP
2ELK27.85.9e-107596122
                    ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                           ELK +L+++Y+++L+++++E++
  Traes_6BS_FE119B025.1 75 ELKSELKQGYKEKLVDIREEIM 96
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011888.3E-47596IPR005539ELK domain
PROSITE profilePS512139.837595IPR005539ELK domain
PfamPF037892.6E-67596IPR005539ELK domain
PROSITE profilePS5007111.51595158IPR001356Homeobox domain
SuperFamilySSF466895.56E-1697160IPR009057Homeodomain-like
SMARTSM003894.9E-1097162IPR001356Homeobox domain
CDDcd000864.71E-1198159No hitNo description
Gene3DG3DSA:1.10.10.602.7E-24102158IPR009057Homeodomain-like
PfamPF059203.8E-18115154IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS ETNMFDGNDG SDGMGFGPLI  60
LTEGERSLIE RVRHELKSEL KQGYKEKLVD IREEIMRKRR AGKLPGDTAA TLKAWWQAHS  120
KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSSN TASSSEKTKK KRNVTGNDGT  180
EQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151171RKRNWHSSNTASSSEKTKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195853.11e-134homeobox protein knotted-1-like 2 isoform X1
SwissprotQ0E3C31e-125KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3B6PHU51e-133A0A3B6PHU5_WHEAT; Uncharacterized protein
STRINGTraes_6BS_FE119B025.11e-134(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-101KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]