PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_F2B8B4E55.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 278aa    MW: 29860.7 Da    PI: 7.7217
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_F2B8B4E55.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.62.2e-275097552
                 RWP-RK  5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                           +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  Traes_6BS_F2B8B4E55.1 50 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 97
                           799******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.50635118IPR003035RWP-RK domain
PfamPF020423.0E-255097IPR003035RWP-RK domain
SuperFamilySSF542778.18E-20169242No hitNo description
SMARTSM006665.3E-18175266IPR000270PB1 domain
PROSITE profilePS5174517.843175266IPR000270PB1 domain
CDDcd064076.19E-35176265No hitNo description
Gene3DG3DSA:3.10.20.2405.9E-24176242No hitNo description
PfamPF005643.6E-13176244IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
NNRGDYVTND SDEEDGDQAG GVHGADQSGA EDRVPPPETK KTGRKAGRPV SLKELQGYFS  60
GSLKDAARSL GVCPTTMKRI CRQHGISRWP FRKISKVNRA LGKIRAIESV DCSSKPTAAS  120
SSTSRRAPAP RLPCLSSALG EDTSSQGSSQ DPPPLTKTTM RKSLLWHSNG AEGELVTIKA  180
NYRGDIIRFR VPCSAGVAAV KEEVAKRLGL DAGTFDVKYL DDDHEWVLLS CDADFQECLD  240
VAPXXXXXXX GAGAVSPVVR LMVQEVADNH RSSCGSSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643140.0AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153726.11e-177protein NLP3-like isoform X2
TrEMBLA0A3B6PHY70.0A0A3B6PHY7_WHEAT; Uncharacterized protein
STRINGTraes_6BS_F2B8B4E55.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.13e-33Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]