PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_E7F14E50B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 41aa MW: 4530.01 Da PI: 8.9747 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.8 | 3.7e-13 | 7 | 32 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ Traes_6BS_E7F14E50B.1 7 FKTKLCDNFTK-GSCTFGDRCHFAHGE 32 79*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-18 | 2 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-11 | 5 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-8 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.821 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-11 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 41 aa Download sequence Send to blast |
SHRGSNFKTK LCDNFTKGSC TFGDRCHFAH GENELRKSAA A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164455.1 | 2e-18 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 6e-19 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A446W944 | 4e-20 | A0A446W944_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BS_E7F14E50B.1 | 6e-22 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-18 | C3H family protein |
Publications ? help Back to Top | |||
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