PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_BD894AD26.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 926aa    MW: 102537 Da    PI: 5.9188
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_BD894AD26.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23135236199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+
  Traes_6BS_BD894AD26.1 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVL 220
                            99*****************************86555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Traes_6BS_BD894AD26.1 221 FI--WNDNNQLLLGIRRA 236
                            **..7777778**99997 PP

2Auxin_resp120.61.2e-39261344183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Traes_6BS_BD894AD26.1 261 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 344
                            79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-48120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41127250IPR015300DNA-binding pseudobarrel domain
CDDcd100179.76E-21134235No hitNo description
SMARTSM010192.2E-24135237IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901135237IPR003340B3 DNA binding domain
PfamPF023626.9E-22135236IPR003340B3 DNA binding domain
PfamPF065071.5E-34261344IPR010525Auxin response factor
SuperFamilySSF542777.36E-8784870No hitNo description
PfamPF023092.0E-8786880IPR033389AUX/IAA domain
PROSITE profilePS5174522.709794878IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MNLSPSAXXX GLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ  60
VSASTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL  120
PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSIFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGGKEDDL TSSLMWLRDG ANPGFQSFNF  420
GGLGMSPWMQ PRMDSSLLGL QPDMYHAMSA AAFQNTTKQV SPTLLQFQQP QNIAGRSALL  480
SSQILQQVQP QFQEMHHQNI NDSAIQGHNQ PEYLQQQLQR CQSFNGQKSP LPQQQESHHQ  540
HQQQQSQCMQ TPQHQQMQEQ KHSPDFQCVP NGLSVFSQLS STNQSPPSTL QTVSAFSQQQ  600
NLQDRNISSL SPSNIPSMHD TLRPFPSEAG SNLQGVPRTT PLPVSDPWSS KRVAMESVIP  660
SSSHVNSSHI QQLDSAPSNI PQSSSLAPLP GRECLVDQDG NSDNQNHLLF GVNIDSQSLL  720
MQGGIPSLQE DNGCIASLQD DNDSSTIPYS TCNFLSPSQN DFPLNEALAS SGCLDESGYA  780
SFSENSDHVN QSTAAFVKVY KSGTFGRLLD ITKFSSYHEL RSEVGHLFGL EGQLEDPARS  840
GWQLVFVDRE DDILLVGDDP WQEFVNSVSC IKILTPQEVQ QMGKQGIDLL SSAPARMLGN  900
SCDNYAGRQE SRSLSTVIAS VGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622837051393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6PJ820.0A0A3B6PJ82_WHEAT; Auxin response factor
TrEMBLA0A446W6S80.0A0A446W6S8_TRITD; Auxin response factor
STRINGTraes_6BS_BD894AD26.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]