PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_BD894AD26.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 926aa MW: 102537 Da PI: 5.9188 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+ Traes_6BS_BD894AD26.1 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVL 220 99*****************************86555544..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++ +l+++++r+ Traes_6BS_BD894AD26.1 221 FI--WNDNNQLLLGIRRA 236 **..7777778**99997 PP | |||||||
2 | Auxin_resp | 120.6 | 1.2e-39 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Traes_6BS_BD894AD26.1 261 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 344 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-48 | 120 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-41 | 127 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.76E-21 | 134 | 235 | No hit | No description |
SMART | SM01019 | 2.2E-24 | 135 | 237 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.901 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-22 | 135 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-34 | 261 | 344 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 7.36E-8 | 784 | 870 | No hit | No description |
Pfam | PF02309 | 2.0E-8 | 786 | 880 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.709 | 794 | 878 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MNLSPSAXXX GLPDQPASPE VSEEHKCLNS ELWHACAGPL VSLPAVGSRV LYFPQGHSEQ 60 VSASTNKEME SQIPNYPNLP AQLICQLHNV TMHADAETDE VYAQMTLQPL SPQELKDPFL 120 PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTQQP PAQELMAKDL 180 HGNEWKFRHI FRGQPKRHLL TTGWSIFISA KRLVAGDSVL FIWNDNNQLL LGIRRANRSQ 240 TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRI 300 SVGMRFRMLF ETEESSVRRY MGTITGISDL DPARWPNSHW RSVKVGWDES TAGERQPRVS 360 LWEIEPLTTY PMYSSPFPMR LKRPWPTGLP SLYGGKEDDL TSSLMWLRDG ANPGFQSFNF 420 GGLGMSPWMQ PRMDSSLLGL QPDMYHAMSA AAFQNTTKQV SPTLLQFQQP QNIAGRSALL 480 SSQILQQVQP QFQEMHHQNI NDSAIQGHNQ PEYLQQQLQR CQSFNGQKSP LPQQQESHHQ 540 HQQQQSQCMQ TPQHQQMQEQ KHSPDFQCVP NGLSVFSQLS STNQSPPSTL QTVSAFSQQQ 600 NLQDRNISSL SPSNIPSMHD TLRPFPSEAG SNLQGVPRTT PLPVSDPWSS KRVAMESVIP 660 SSSHVNSSHI QQLDSAPSNI PQSSSLAPLP GRECLVDQDG NSDNQNHLLF GVNIDSQSLL 720 MQGGIPSLQE DNGCIASLQD DNDSSTIPYS TCNFLSPSQN DFPLNEALAS SGCLDESGYA 780 SFSENSDHVN QSTAAFVKVY KSGTFGRLLD ITKFSSYHEL RSEVGHLFGL EGQLEDPARS 840 GWQLVFVDRE DDILLVGDDP WQEFVNSVSC IKILTPQEVQ QMGKQGIDLL SSAPARMLGN 900 SCDNYAGRQE SRSLSTVIAS VGSVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 28 | 370 | 51 | 393 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199461.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A3B6PJ82 | 0.0 | A0A3B6PJ82_WHEAT; Auxin response factor | ||||
TrEMBL | A0A446W6S8 | 0.0 | A0A446W6S8_TRITD; Auxin response factor | ||||
STRING | Traes_6BS_BD894AD26.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Publications ? help Back to Top | |||
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