PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_B50BEBC7E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 630aa    MW: 68533.5 Da    PI: 6.4477
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_B50BEBC7E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28211264155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Traes_6BS_B50BEBC7E.2 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 264
                            79*******************.********************************8 PP
2Response_reg59.81.5e-205614125109
                            EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
           Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                             v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga d+l Kp+  e+l +
  Traes_6BS_B50BEBC7E.2  56 AVTTTGQAATALRMLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLKT 141
                            466777777788888777778*******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.73925147IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.0E-1431143IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363924.5E-15746629IPR017053Response regulator B-type, plant
SuperFamilySSF521721.18E-2553151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-3253178No hitNo description
PfamPF000722.6E-1756142IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.57E-2257147No hitNo description
Gene3DG3DSA:1.10.10.601.0E-29208269IPR009057Homeodomain-like
PROSITE profilePS5129411.189208267IPR017930Myb domain
SuperFamilySSF466896.81E-20209268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24211264IPR006447Myb domain, plants
PfamPF002492.2E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MFFRWEFCLD FLSPLSACAV LFFFSLAILP KPRFMCAMCC YGGLLMCLDS ICCDVAVTTT  60
GQAATALRML RENKDQFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANGETQTVMK  120
GITHGACDYL LKPVRLEQLK TIWQHVIRRN TKNRGSDNDD AGQKGPNAEG ENGGANRNKR  180
QSRRDRDENG DDGDDSDENS NDNGDSSSQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKK  240
ILDLMNVENI TRENVASHLQ KYRLYLKRMS MDASRQANLV AALGGRNPAY SNMNSMDVFR  300
HYSNTYGRYR PVPTSNHSQS NNLVARMNSP SAYGMHGLLS PQSQPLHLGH AQNNLGTSLN  360
DLGVNNGNLI RGAQMSTMVT GTSGNSFANI SNGAPLAPTN RAVQSLESNN RQHLGRINSS  420
STDSFSSFAS DSPHFPDLGR SSNTWQTAVP SNIQQLGQNG SMSQASLHGN GPRMEPVSSY  480
APPSNQITSL GNDMQNQVAP LASNSLPMVF NQGAAPFTFG NSTNSREALN SNLAFSNSGI  540
NTSLPNLRID NSVVPRQTLD GGNTGGVPSL QDGKIDQQAV GNQLNYNNND LVGTSGLQRE  600
LSGGLDDIVV DMFRPDNDNG GIFDTDWGLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25207270164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3637600.0AK363760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2018L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158305.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A446W7B90.0A0A446W7B9_TRITD; Two-component response regulator
STRINGTraes_6BS_B50BEBC7E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-79response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]