PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_96BBFCC97.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 79aa MW: 9438.43 Da PI: 5.902 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.7e-18 | 4 | 53 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++q+++Le++F ++++p++++r++ +++l+++ + +k+WF+NrRa++++ Traes_6BS_96BBFCC97.1 4 SDNQIQILESVFIECPNPDEAQRAHHSRELRVEPQHIKIWFKNRRAQMRR 53 789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.349 | 1 | 54 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.29E-12 | 3 | 53 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-15 | 3 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-7 | 3 | 58 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-16 | 3 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-15 | 4 | 53 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MDLSDNQIQI LESVFIECPN PDEAQRAHHS RELRVEPQHI KIWFKNRRAQ MRRARHEQVD 60 NHLSGSENDE IDLKSDEIH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438026.1 | 5e-18 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 6e-18 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3B6PGT7 | 1e-50 | A0A3B6PGT7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446W214 | 1e-50 | A0A446W214_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BS_96BBFCC97.1 | 2e-51 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37023 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 2e-18 | homeodomain GLABROUS 11 |
Publications ? help Back to Top | |||
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