PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_8F1EC63B9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22762.7 Da PI: 6.0283 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.5 | 5.3e-11 | 1 | 23 | 21 | 43 |
HHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 21 lKKAeELSvLCdaevaviifsst 43 +KKA EL vLCda+vavi++ss+ Traes_6BS_8F1EC63B9.1 1 MKKARELAVLCDAQVAVIVLSSS 23 8********************86 PP | |||||||
2 | K-box | 84.5 | 2.2e-28 | 44 | 141 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 yq+++g+sl+++++e++q+ l++Lk+ ++nL++e+R+++GedL+ L+++eL+ Leq++ +l+ +R++K++++++q+e+ +kk k + Traes_6BS_8F1EC63B9.1 44 YQQATGTSLWTEQYENMQRTLSQLKDINRNLRTEIRQRMGEDLDALEFQELRGLEQNVGAALEVVRQRKYHVITRQTETYKKKVKHSE 131 89999*********************************************************************************** PP K-box 89 eenkaLrkkl 98 e k+L+++l Traes_6BS_8F1EC63B9.1 132 EVYKKLKQEL 141 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.479 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-8 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-14 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-20 | 55 | 141 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.795 | 57 | 147 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKKARELAVL CDAQVAVIVL SSSASYCSSS SDATCSIKGV FDRYQQATGT SLWTEQYENM 60 QRTLSQLKDI NRNLRTEIRQ RMGEDLDALE FQELRGLEQN VGAALEVVRQ RKYHVITRQT 120 ETYKKKVKHS EEVYKKLKQE LSMREDPAFG FMDNPVMGGW DGVAAVEMGG DGSEADMYAF 180 HAVSSQLDLH GMAYGSSHCP LFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502879 | 1e-177 | AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148658.1 | 1e-127 | MADS-box transcription factor 16-like | ||||
Swissprot | Q944S9 | 1e-89 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A3B6PJ07 | 1e-138 | A0A3B6PJ07_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BS_8F1EC63B9.1 | 1e-152 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-38 | MIKC_MADS family protein |