PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_833C847B7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 571aa MW: 66980.8 Da PI: 7.524 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.3 | 1.4e-24 | 21 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 fYn+YA e GFsvrks+ + n+ i+ r+ vCs++g+ree++ k ++++rr+r+ tr+gC+akl++++++ +g+w v+++ eH Traes_6BS_833C847B7.1 21 FYNKYALEKGFSVRKSYVEWDGSNKYIILRNIVCSCQGFREEKHMKrkmEDRKRRPRSLTRVGCNAKLVITRQEeTGRWFVKDFIDEH 108 9*****************************************999988889999*******************99************* PP FAR1 86 nHelap 91 +H+lap Traes_6BS_833C847B7.1 109 SHPLAP 114 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-22 | 21 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-33 | 235 | 329 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.854 | 513 | 552 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MFEYLNVISK MFDSEAEGYG FYNKYALEKG FSVRKSYVEW DGSNKYIILR NIVCSCQGFR 60 EEKHMKRKME DRKRRPRSLT RVGCNAKLVI TRQEETGRWF VKDFIDEHSH PLAPRDISCL 120 LRSHRRISDE QKADIADMEK CGICKYHIMD ILCFQYGGFD KVGCIKRDIY NFCHANKQET 180 ISVGDANTVI MHMMARRERD VDFFFKYLVD EHGHLKGLFW ADSQSRLDYE AFRDVIVFDS 240 TYRTNKYNLP FVPFVRLNHH RNTLIFGCGI ISHETSQAYE WMLRTFSDCM AQKHPISVII 300 DGDLAMQRAI RVVWPDSNHR LCIWHIQQNI VRHLHDDDVK EEFKSFIYDT SSIEEHEIKW 360 IRFLQQNKVT SEESWLHQMY HMRKLWCAPY LEGRCFLGLS SNQRSESLNS VLHTHLEGKM 420 SLFEMLEHYE RCLASRQINE ALHDVEALQS VPFTEENASP LEKHAATVFT PSVFKMVLWS 480 IDAVSKCQIR EILDGSEDST YVVSKQERMD KKFGVCVEEQ GGLLHRVSCS CRKMECTGTP 540 CSHIFYILGI LKHTILPSCC VPTRWTMNAK C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 75 | DRKRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162107.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453GLU9 | 0.0 | A0A453GLU9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6BS_833C847B7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-97 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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