PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_5790FB139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 103aa MW: 11547 Da PI: 10.4752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17 | 1.1e-05 | 60 | 86 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++ +P + Traes_6BS_5790FB139.1 60 SHSLAERARREKITKRMKILQDPVPGC 86 8***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-7 | 53 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.337 | 56 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-7 | 59 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
ITDIEAKCFK AHKSNDESGS FRKDAEADSR NATKAVDQNP PPQKQGFIHV RARRGQATDS 60 HSLAERARRE KITKRMKILQ DPVPGCNKVS YPLEKNSGRY LGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564434 | 1e-103 | FN564434.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0954b. | |||
GenBank | HG670306 | 1e-103 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152106.1 | 2e-48 | transcription factor bHLH79-like | ||||
Swissprot | Q84T08 | 4e-35 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A453M4M3 | 2e-48 | A0A453M4M3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6BS_5790FB139.1 | 1e-71 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-23 | BIG PETAL P |
Publications ? help Back to Top | |||
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