PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_5790FB139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 103aa    MW: 11547 Da    PI: 10.4752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_5790FB139.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-056086430
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                           +h+ +Er RR++i +++  L++ +P +
  Traes_6BS_5790FB139.1 60 SHSLAERARREKITKRMKILQDPVPGC 86
                           8***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-75389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.33756103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-75995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
ITDIEAKCFK AHKSNDESGS FRKDAEADSR NATKAVDQNP PPQKQGFIHV RARRGQATDS  60
HSLAERARRE KITKRMKILQ DPVPGCNKVS YPLEKNSGRY LGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644341e-103FN564434.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0954b.
GenBankHG6703061e-103HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.12e-48transcription factor bHLH79-like
SwissprotQ84T084e-35BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A453M4M32e-48A0A453M4M3_AEGTS; Uncharacterized protein
STRINGTraes_6BS_5790FB139.11e-71(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-23BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]