PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_5789476CB.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 291aa    MW: 32186.2 Da    PI: 7.5049
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_5789476CB.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-274797151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss
  Traes_6BS_5789476CB.2 47 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 97
                           79***********************************************96 PP
2K-box71.62.3e-24109208199
                  K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                            yq++++++  e ++ ++   e++++++e+e+L   +R++ G+dL+sLsl + + +eqqLe s+ k+R++K++ll +q+++l++ke+ l
  Traes_6BS_5789476CB.2 109 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARKHQLLNQQLDNLRRKEHIL 196
                            67777777677788899999******************************************************************** PP

                  K-box  88 qeenkaLrkkle 99 
                            +++n  L +++ 
  Traes_6BS_5789476CB.2 197 EDQNSFLCRMIS 208
                            *******99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.3383999IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-403998IPR002100Transcription factor, MADS-box
CDDcd002652.21E-4140116No hitNo description
SuperFamilySSF554552.49E-3140126IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004195IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-294161IPR002100Transcription factor, MADS-box
PfamPF003196.0E-254895IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-296176IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-297697IPR002100Transcription factor, MADS-box
PfamPF014861.4E-23118207IPR002487Transcription factor, K-box
PROSITE profilePS5129713.453123213IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MCISPPPLQG ERDQGAGDAQ SHSLVPLVGS IVAVAVAEMG RGKIEIKRIE NATNRQVTFS  60
KRRGGLLKKA NELAVLCDAR VGVVIFSSTG RMFEYSSPAS SLRDLIEQYQ NATNSQFEEI  120
NHDQQIFVEM TRMRNEMEKL DGAIRRYTGD DLSSLSLADV NDIEQQLEFS VAKVRARKHQ  180
LLNQQLDNLR RKEHILEDQN SFLCRMISEN QHGSDRKMAV MPPVLSMLTP AFPATPYYTG  240
EESSSTALQL TSPQLQLHAA EAAXGCSRRS PTCRTRRAAA STPATASTSE I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-183997159Myocyte-specific enhancer factor 2B
1tqe_Q9e-183997159Myocyte-specific enhancer factor 2B
1tqe_R9e-183997159Myocyte-specific enhancer factor 2B
1tqe_S9e-183997159Myocyte-specific enhancer factor 2B
6c9l_A9e-183997159Myocyte-specific enhancer factor 2B
6c9l_B9e-183997159Myocyte-specific enhancer factor 2B
6c9l_C9e-183997159Myocyte-specific enhancer factor 2B
6c9l_D9e-183997159Myocyte-specific enhancer factor 2B
6c9l_E9e-183997159Myocyte-specific enhancer factor 2B
6c9l_F9e-183997159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028930.0AM502893.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM25 (WM25 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188803.11e-164MADS-box transcription factor 29-like isoform X1
SwissprotQ6H7111e-129MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLA0A3B6PIE11e-164A0A3B6PIE1_WHEAT; Uncharacterized protein
STRINGTraes_6BS_5789476CB.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  6. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  7. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  8. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]