PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_487628194.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 244aa    MW: 26842.6 Da    PI: 8.6159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_487628194.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1164125454
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 
                            ++  rE+ RRd++N++f eL +++ +              +++ Kl+Ka+iL  A++ + +L
  Traes_6BS_487628194.1  64 SKACREKMRRDKLNDRFLELCSVMNSgKHtgleecsasnPGKNAKLDKASILSDATRMLTQL 125
                            6789**********************666****************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.36360125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1162142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-763130No hitNo description
PfamPF000101.6E-864125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1165147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-766131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
YDDDDPSCWF VLKHAPFKIR VAFSFAAYLS GLGIEDVSGG DSGLGHSNLG KRGRDEPSSS  60
GPKSKACREK MRRDKLNDRF LELCSVMNSG KHTGLEECSA SNPGKNAKLD KASILSDATR  120
MLTQLRGETE KLKESNVNLR ETIKDLKVEK NELRDEKLSL KAEKERLEQQ LKAANAAPTG  180
FAPHMPYPAA FHPAVFPPFA PPYQVPANKG APVPAAFPGM AMWHWLPPTA MDTTQDPKLW  240
PPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691720.0AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01.
GenBankAK3702300.0AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07.
GenBankAK3735130.0AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158150.11e-144transcription factor ILR3-like
TrEMBLA0A3B6PFQ71e-154A0A3B6PFQ7_WHEAT; Uncharacterized protein
STRINGTraes_6BS_487628194.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-51bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]