PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_487628194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 26842.6 Da PI: 8.6159 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.2e-11 | 64 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +++ + +++ Kl+Ka+iL A++ + +L Traes_6BS_487628194.1 64 SKACREKMRRDKLNDRFLELCSVMNSgKHtgleecsasnPGKNAKLDKASILSDATRMLTQL 125 6789**********************666****************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.363 | 60 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 62 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.31E-7 | 63 | 130 | No hit | No description |
Pfam | PF00010 | 1.6E-8 | 64 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 65 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-7 | 66 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
YDDDDPSCWF VLKHAPFKIR VAFSFAAYLS GLGIEDVSGG DSGLGHSNLG KRGRDEPSSS 60 GPKSKACREK MRRDKLNDRF LELCSVMNSG KHTGLEECSA SNPGKNAKLD KASILSDATR 120 MLTQLRGETE KLKESNVNLR ETIKDLKVEK NELRDEKLSL KAEKERLEQQ LKAANAAPTG 180 FAPHMPYPAA FHPAVFPPFA PPYQVPANKG APVPAAFPGM AMWHWLPPTA MDTTQDPKLW 240 PPNA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369172 | 0.0 | AK369172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2086D01. | |||
GenBank | AK370230 | 0.0 | AK370230.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107F07. | |||
GenBank | AK373513 | 0.0 | AK373513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033I05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158150.1 | 1e-144 | transcription factor ILR3-like | ||||
TrEMBL | A0A3B6PFQ7 | 1e-154 | A0A3B6PFQ7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BS_487628194.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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