PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6BS_460814030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 161aa MW: 16962.1 Da PI: 9.9324 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Traes_6BS_460814030.1 100 KTKLCNKYNTAEGCKWGDKCHFAHGE 125 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.4 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.033 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-7 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-14 | 95 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-9 | 97 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.063 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-5 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MEGGGRKRGT HDGASVGGKR TRESESFQTG VGSKSKPCTK FFSTAGCPFG EGCHFLHYFP 60 GGHQAVAKMS NLGGQAFAHP QGRVPAGSAV PDGHPTPTVK TKLCNKYNTA EGCKWGDKCH 120 FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164455.1 | 1e-112 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 2e-84 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3B6PLU9 | 1e-114 | A0A3B6PLU9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_70AD4B0D5.1 | 1e-112 | (Triticum aestivum) | ||||
STRING | Traes_6BS_460814030.1 | 1e-114 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-24 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|