PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_444DFA94E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1070aa MW: 119613 Da PI: 6.3776 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.4e-22 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F Traes_6BS_444DFA94E.2 71 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 157 99******************************9999986.************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r+ Traes_6BS_444DFA94E.2 158 V--RDEKQQLLLGIRRA 172 *..5688889****997 PP | |||||||
2 | Auxin_resp | 115 | 6.9e-38 | 197 | 280 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ Traes_6BS_444DFA94E.2 197 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 280 799********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-41 | 60 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-39 | 63 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-18 | 70 | 162 | No hit | No description |
Pfam | PF02362 | 3.3E-20 | 71 | 172 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-21 | 71 | 173 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.448 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.5E-33 | 197 | 280 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.0E-8 | 934 | 1022 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.947 | 937 | 1021 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.65E-6 | 951 | 1016 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1070 aa Download sequence Send to blast |
MQKDVEAHVP SYPNLPSKLI CLLHSVTLQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA 60 LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE LQARDIHDNV 120 WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGVLAAAAHA SANTSPFTIF YNPRASPTEF VIPFAKYQKA MYSNQISLGM 240 RFRMMCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE RRNRVSIWEI 300 EPLAAPFFIC PQPFFGVKRP RQLDDESLEM ESLLKRAMPW LGEEVCIKDP QTQSVTMPGL 360 SLVQWMNMNR QQSSSLASTA MQSEYYRSAS NPAMQNIGAA DLARQLYMQN HLLQQNSMQF 420 NPPKLHQQMK PINDLSNAAL PLNQLGAIRN HQDQKQDQQR QQQSSIQAIP LSQAQPQTNN 480 VQAQVILQNQ MQQQQQQKQP PPSPTQNQHG SSGQHLLQSH QLQDQNLQMQ QQQLLLHQQL 540 QQQQQQQLNK LPGQLANLAS QQTQLSEQEL HLQLLQKLQQ QSLMSQSAVT LSRLPIIQEQ 600 QNFLVDMQQQ LSNSHSLAQQ QVMPQQDCRT SSLQTTQLPP PIQQEQQQQK PSQKQVAPTY 660 VSEAAFAQIS STSVIPKTGN TMIVPGAAQS AVTEEIPSCS TSPSTANGNH LAQPTIGRND 720 HCKVSTEKVP HSIAQMSILT PIEAVSVTPV TTKELPKLNN GVKSSAITSK LPNVVSGLQN 780 FMNNALPTDN LETASSATSL WPSQTDGLLH QGFATSNFNQ HQMFKDELPD VEIQGVDPSN 840 SALFGMNNDG PLGFPMETEG LLENALDSVK YQNHFSTDDE NNYQMQKDAR QEISTSMVSQ 900 SFGQSDMAFN SIDSAINDGA LMNRSSWPPA APPQRMRTFT KVYKRGAVGR SIDIGRFSGY 960 GELNQALARM FGIEGQLEDR QRIGWKLVYT DHEDDVLLLG DDPWEEFVNC VKCIRILSPQ 1020 EVQKMSLDGD LGSNVLPNQA CSSSDGGNTW KPRYEQNSGN PSIGPYDQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-137 | 2 | 301 | 89 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155071.1 | 0.0 | auxin response factor 5-like isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3B6PJV2 | 0.0 | A0A3B6PJV2_WHEAT; Auxin response factor | ||||
STRING | Traes_6BS_444DFA94E.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 1e-176 | ARF family protein |
Publications ? help Back to Top | |||
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