PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_44456AE22.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 475aa    MW: 52461.8 Da    PI: 9.5593
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_44456AE22.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97.1e-31107160255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Traes_6BS_44456AE22.1 107 PRLRWTPDLHMAFIRAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 160
                            8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.702103163IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-28103161IPR009057Homeodomain-like
SuperFamilySSF466898.42E-14106161IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-22107162IPR006447Myb domain, plants
PfamPF002495.0E-9108159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MITREEERIM RDVEDKQVIA EIIMDDRKRS VKERTLDLNE EIDMESEEGE VGNDKDEEEE  60
DDGGSTTDVA GSRSSSNNSS TNHASETQKG TGGGEHRVRQ YNRSKLPRLR WTPDLHMAFI  120
RAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHEGQRI RGAISSVFSP  180
MDFHSMRGDR RFHDMLLQRA AALSSTAERG GFFVSRNGGG GGNTTSRLYG ILQHQHRPSP  240
MQSGFKNCSF RNQEWAFDQR GMMARNDVKA PSTTPHFFAS SSVRRWPLTS AVAGAGEQMR  300
DESFGYFTGH GSGPLSRPMA PATSVVPGGG NHRLPFRWHG GDGGKGAKAT SSDPVMIVEA  360
LDSQQQKHLE QQRALITLAD KMRLPAETPE LELSLSPATA TETTDGTPSK KRKKSTPASR  420
EKELEHANKL SISLSLLPPA ASMPMQRQEK TRGGSVEAAL GQSTLDLTMS IRALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-18108160355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18108160355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18108160355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18108160355Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-18108162458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409413KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187256.10.0uncharacterized protein LOC109772958 isoform X1
TrEMBLA0A3B6PIB00.0A0A3B6PIB0_WHEAT; Uncharacterized protein
STRINGTraes_6BS_44456AE22.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-37G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]