PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_2951D8114.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 291aa MW: 32310.5 Da PI: 4.8617

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_2951D8114.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	175.4	5.9e-55	113	217	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql+ fw++q ie+atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr Traes_6BS_2951D8114.2 113 QLREFWATQmeeIEQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITR 200 89***996677899******************************************************************** PP NF-YC 86 tdifdflvdivprdelk 102 tdi+dflvdi+prd++k Traes_6BS_2951D8114.2 201 TDIYDFLVDIIPRDDMK 217 ************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.300	9.3E-4	86	127	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF47113	2.68E-33	93	207	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.9E-37	128	199	IPR009072	Histone-fold
Pfam	PF00808	9.9E-21	135	198	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MCSDNLSLFG ILRSTFSDEI LSDRKIFGFA RTRSHMEPSS QPEPVVGVAT AGSQAYPPPA 60 AYPAPAMPAA IPPGSQPAVP FPANPAQLSA QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAT 120 QMEEIEQATD FKNHTLPLAR IKKIMKADED VRMISAEAPV VFAKACEVFI LELTLRSWMH 180 TEENKRRTLQ KNDIAAAITR TDIYDFLVDI IPRDDMKEEG LGLPRVGLPP AALGAPADAY 240 PPYYYVPAQQ VPGVGMMYGG QQGHPVAYAW QQPQGQQAEE APEEQQQSPS N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-56	120	213	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078732	0.0	KM078732.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-A7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188795.1	0.0	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	1e-120	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A3B6PJN3	0.0	A0A3B6PJN3_WHEAT; Uncharacterized protein
TrEMBL	A0A446W8G1	0.0	A0A446W8G1_TRITD; Uncharacterized protein
STRING	Traes_6BS_2951D8114.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	6e-65	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]