PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_2125E90F3.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 290aa MW: 31937.4 Da PI: 8.3269

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_2125E90F3.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	112	165	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Traes_6BS_2125E90F3.2 112 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 165 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-15	109	166	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-29	110	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	112	166	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	113	164	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDQFSQHLGF LRASATDMAS KDGTPPSAWT PPPSAANAAS YSNHISNHYH HRMNALLKPI 60 RGVPIYHHHP SFXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGRRSVR APRMRWTTTL 120 HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTIKSTD KSMTSPGQNE 180 GFDNGSAGEI SDESLPEALN THRGTDQNGT SANSHSGSSY NGGLWSNSSS RVGWPGFGTN 240 GTENRGQCHK EADASKSLEM SGEMNVSCIS DQTSSPPVPN LEFTLGRTHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-16	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157570.1	1e-172	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	8e-48	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3B6PFP1	0.0	A0A3B6PFP1_WHEAT; Uncharacterized protein
TrEMBL	A0A446VXA8	0.0	A0A446VXA8_TRITD; Uncharacterized protein
STRING	Traes_6BS_2125E90F3.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-50	G2-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]