PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BS_179B5B6E1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23636.5 Da PI: 6.6587 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.8 | 3.3e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+ap+f++eq +++f ++hk+FGasnv+kll++lp +r++a++++ yeA+ar++ PvyG+v++i++lqqq Traes_6BS_179B5B6E1.1 7 PCGACKFLRRKCVNGCVFAPHFCHEQgAAHFGAIHKVFGASNVSKLLTSLPAIDRREAAATISYEAQARLHHPVYGCVAHIFALQQQA 94 7*************************89************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+a+l++lk++ Traes_6BS_179B5B6E1.1 95 VNLQAQLESLKAQ 107 ********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.252 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTGFSSPCGA CKFLRRKCVN GCVFAPHFCH EQGAAHFGAI HKVFGASNVS KLLTSLPAID 60 RREAAATISY EAQARLHHPV YGCVAHIFAL QQQAVNLQAQ LESLKAQAPQ GYTNTYSASS 120 PEEDSIKAEV MACQKGEARM PRPAELCPSV KSESESYFGN GLMTCNSMQS SQDYNISHVY 180 TPNYTAPFND DGIHSSTMFP VDIQEYLQEN GNYWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163832.1 | 1e-142 | LOB domain-containing protein 17-like | ||||
Swissprot | Q5UG13 | 2e-60 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A3B6PHJ6 | 1e-161 | A0A3B6PHJ6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446W0M5 | 1e-161 | A0A446W0M5_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BS_179B5B6E1.1 | 1e-162 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 3e-50 | LBD family protein |
Publications ? help Back to Top | |||
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