PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_0A7B95279.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 66aa MW: 7763.71 Da PI: 5.0682

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_0A7B95279.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.5	1e-08	25	66	1	42
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA e G svrks+ + n+ i+ r+ Cs++g+re Traes_6BS_0A7B95279.1 25 EFYNKYALEKGVSVRKSYVEWDGSNKYIILRKIACSRQGFRE 66 6**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-6	25	66	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
ASDESMFEYL NVVSKMFDSE AEGYEFYNKY ALEKGVSVRK SYVEWDGSNK YIILRKIACS 60 RQGFRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	4e-97	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188780.1	7e-38	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A452XR33	3e-36	A0A452XR33_AEGTS; Uncharacterized protein
TrEMBL	A0A453DSV9	3e-36	A0A453DSV9_AEGTS; Uncharacterized protein
STRING	Traes_6BS_0A7B95279.1	7e-41	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]