PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_0A692E6F6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Whirly

Protein Properties

Length: 229aa MW: 25196.7 Da PI: 10.1995

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_0A692E6F6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	183.4	4.2e-57	52	189	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 v+k+kaal++ +++p f++l+sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+ Traes_6BS_0A692E6F6.1 52 VFKGKAALSISPILPLFTKLESGGSRVNRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQ 139 9************************************************************************************* PP Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v+k+l++ Pl G+fvn++v n+++k+ne++svPv+kaefav+r++l+ Traes_6BS_0A692E6F6.1 140 VKKSLSITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 189 *******999*******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.2E-73	39	209	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	2.82E-70	44	229	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	6.2E-58	52	186	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
VYNKFSFVLF RGVTDLKDVL WSSSLTFKHA LSTSAANVDE STSARKFASY TVFKGKAALS 60 ISPILPLFTK LESGGSRVNR NGSVMLTFFP AVGQRKYDYT KKQLFALSPT EVGSLISLGP 120 AESCEFFHDP SMKSSHEGQV KKSLSITPLG SDNGYFVNIT VLNNVQKTNE RLSVPVTKAE 180 FAVMRTALSF ALPHIMGWDQ ALSTHPQSTS TSASKPRFER PNPASEWDR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4kop_A	5e-74	43	205	8	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B	5e-74	43	205	8	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C	5e-74	43	205	8	169	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D	5e-74	43	205	8	169	Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249976	0.0	AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180430.1	1e-155	single-stranded DNA-bindig protein WHY2, mitochondrial
Swissprot	D9J034	2e-76	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A3B6PHE2	1e-160	A0A3B6PHE2_WHEAT; Uncharacterized protein
STRING	Traes_6BS_0A692E6F6.1	1e-168	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	8e-76	WHIRLY 2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]