PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_00E54518B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 85aa    MW: 9731.95 Da    PI: 10.093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_00E54518B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11342852
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                    HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                            ErrRR+r+N++fe Lr llP+       K +Ka++L  + +Y++
  Traes_6BS_00E54518B.1  3 SERRRRERLNESFEALRGLLPPG-----SKKDKATVLANTLDYMN 42
                           6********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-11150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MISERRRRER LNESFEALRG LLPPGSKKDK ATVLANTLDY MNILIAQISE LEARNRSLET  60
AAQIQQHQRV TNGNSRDRPD EATLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
138ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617113e-80AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155039.16e-39putative transcription factor bHLH041
SwissprotQ9LTS43e-15BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A3B6PKM26e-50A0A3B6PKM2_WHEAT; Uncharacterized protein
TrEMBLA0A446WAJ36e-50A0A446WAJ3_TRITD; Uncharacterized protein
STRINGTraes_6BS_00E54518B.14e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-13bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]