PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_D00F04562.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 297aa    MW: 33126.1 Da    PI: 7.4179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_D00F04562.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49101491128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            lppGfrF P+deelv++yL+ kv++++      ++ ++ evd++ +ePw+Lp  +k + +ewyfFs rd+kyatg r+nrat+sgyWk
  Traes_6BL_D00F04562.1  10 LPPGFRFYPNDEELVCHYLQSKVANQHfagcGGAAGTMVEVDLHVHEPWELPDVAKLSANEWYFFSFRDRKYATGLRTNRATRSGYWK 97 
                            79*************************6664233347***************87788999**************************** PP

                    NAM  85 atgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atgkd+ + s         + + vg++ktLvfy+grap+g+kt Wvmhe+r+
  Traes_6BL_D00F04562.1  98 ATGKDRVIRSPrssssrsgRATIVGMRKTLVFYRGRAPNGTKTCWVMHEFRI 149
                            *********99665555444444***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-587168IPR003441NAC domain
PROSITE profilePS5100555.44410168IPR003441NAC domain
PfamPF023651.1E-2711149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPND EELVCHYLQS KVANQHFAGC GGAAGTMVEV DLHVHEPWEL  60
PDVAKLSANE WYFFSFRDRK YATGLRTNRA TRSGYWKATG KDRVIRSPRS SSSRSGRATI  120
VGMRKTLVFY RGRAPNGTKT CWVMHEFRIE NPHSPPKEDW VLCRVFHKKK ADTDYAMDGK  180
ADLGSGAVSG SNYLSSSSCH DPEQYHQSPM APFPSIGAGG HNYQLLPCDH QHPHGAAGVS  240
VSDVDPFAVM PQLLSYDSIL DFSQQLHGGR SAAACLRDGG DDQLQVQEEH YKYNSLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4811714168NO APICAL MERISTEM PROTEIN
1ut4_B2e-4811714168NO APICAL MERISTEM PROTEIN
1ut7_A2e-4811714168NO APICAL MERISTEM PROTEIN
1ut7_B2e-4811714168NO APICAL MERISTEM PROTEIN
4dul_A2e-4811714168NAC domain-containing protein 19
4dul_B2e-4811714168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173046.11e-179NAC domain-containing protein 92-like
SwissprotQ9S8511e-58NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3B6PRU10.0A0A3B6PRU1_WHEAT; Uncharacterized protein
TrEMBLA0A446WRJ20.0A0A446WRJ2_TRITD; Uncharacterized protein
STRINGTraes_6BL_D00F04562.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-75NAC domain containing protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]