PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_B92FA1D38.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 58aa MW: 6665.66 Da PI: 9.0393 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 9.8e-31 | 1 | 58 | 1 | 57 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 ++Dg++WrKYGqK+ kg+++pr+YYrCt a Cpv+k+v+r++ed +++++tYeg+Hn Traes_6BL_B92FA1D38.1 1 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHN 58 58***************************99**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 6.54E-26 | 1 | 58 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-31 | 1 | 58 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.268 | 1 | 58 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 2 | 58 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-27 | 2 | 58 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MNDGCQWRKY GQKVAKGNPC PRAYYRCTVA PACPVRKQVQ RCQEDMSILI TTYEGTHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 1 | 58 | 14 | 70 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363247 | 3e-85 | AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591124.1 | 9e-37 | PREDICTED: probable WRKY transcription factor 9 | ||||
Refseq | XP_020173302.1 | 1e-36 | probable WRKY transcription factor 9 | ||||
Swissprot | A0A3Q7GFB5 | 1e-35 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
Swissprot | Q9C9F0 | 6e-36 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A453PPS1 | 2e-36 | A0A453PPS1_AEGTS; Uncharacterized protein | ||||
TrEMBL | M7YTI3 | 2e-36 | M7YTI3_TRIUA; Putative WRKY transcription factor 9 | ||||
STRING | TRIUR3_22321-P1 | 4e-37 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-38 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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