PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_B27806C89.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 464aa MW: 51373.8 Da PI: 6.0747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.1 | 1.3e-30 | 56 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 lp+G++F+P+d el+ e+L++k+ + +e+i++v+ i++++P++Lp ++++ ++++fF++ +++y g+rk+r Traes_6BL_B27806C89.1 56 LPAGVKFDPSDLELL-EHLEQKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSVHFFHSISNAYGCGQRKRRRi 139 799************.99****876554555332..333444422344**********.556678899*****************965 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ +W++tgk+k+v++ +g +g kk+Lv+ykg++ g+ ktdWvmh+y+l Traes_6BL_B27806C89.1 140 snsdrttsDEHVRWHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 199 7888865444889************.999***********9987766555*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-36 | 41 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.741 | 56 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-13 | 57 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MARSWLITCR GVAKKVRNAH CSNRQISEVG AEACRECPNC KHIIDNSDVA IQWPGLPAGV 60 KFDPSDLELL EHLEQKIGVG GSKPHMFIDE FIPTVENDAG ICYSHPENLP GTNKDGSSVH 120 FFHSISNAYG CGQRKRRRIS NSDRTTSDEH VRWHKTGKSK PVYDNGVMKG WKKILVLYKG 180 SQTGGKPDKT DWVMHQYHLG VEENEKVGEF VVSKIFYQLK PRQVDKSEAE MANEESNAFT 240 SSICPKTPMT KIPPCRPKNS PCETEQNDPG QEEETVSLAE NAKNPAWCAL SSQPVEVALE 300 AGTCSLDKSL HHHEVLDSSD LENSTFDRPI LSQLMNETLN KNLCALHGLP DLHNVNLGTA 360 PTDLQITKGE NVSLADDAEN TACCSLASQD VEVTSQAGTS LVESLLHHEV SDLHNANLGT 420 PRDLQITVSM FVCVCNLWFP YVCYDKSDHV FFSCCNTVAR VIRA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 137 | RKRRR |
2 | 134 | 138 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374304 | 0.0 | AK374304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3060A12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173041.1 | 0.0 | uncharacterized protein LOC109758588 isoform X1 | ||||
Swissprot | Q6NQK2 | 6e-81 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3B6PKB8 | 0.0 | A0A3B6PKB8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WD28 | 0.0 | A0A446WD28_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_B27806C89.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-84 | NAC domain containing protein 44 |