PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BL_B03A20680.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 295aa MW: 32616.7 Da PI: 9.0559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BL_B03A20680.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00066	186	217	18	54
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++++ + +K + a++L ++++YIk L Traes_6BL_B03A20680.2 186 EKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 217 5777888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.623	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-8	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	183	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.93E-4	186	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGSGSNAALE AQGMNMMSGM PSYANDHHHQ RKEGINHQQQ EHGNPMASFL QHISTRTSAA 60 MHASLDYSGL GALDKICQDG RAMEPASPFS LRSLPDFGSL GGYKTTKEST LVPPYMRSAD 120 RPDRSRQEQE IVPARSSSSS SGPPAATDRK KRTSEERRES TVKKSKQEAS TASPPKQPVP 180 KVKLGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQXXXEPYTN ASRSKGNCNN 240 LLPWGDRAEA SKGEGEHDLR ERGLCLVPVS WTPEVYRDGN AMDYWTPAYR GCLYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369324	0.0	AK369324.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2089B03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182465.1	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q9FYJ6	9e-41	BH111_ARATH; Transcription factor bHLH111
TrEMBL	A0A3B6PPQ2	0.0	A0A3B6PPQ2_WHEAT; Uncharacterized protein
STRING	Traes_6BL_B03A20680.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12698	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-40	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]