PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_A8D141E69.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30485.7 Da PI: 9.5662 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.2e-13 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + G+r+++ r rW AeIrdp + r +lg+f +aeeAa+a+ +++++g Traes_6BL_A8D141E69.1 21 FMGIRQRS-RARWGAEIRDPI----KgVRLWLGTFNSAEEAARAYNVEARRIHG 69 78***999.8*********72....46*******************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-17 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.73 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.96E-27 | 20 | 78 | No hit | No description |
SMART | SM00380 | 7.8E-29 | 20 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-25 | 20 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MTTDFDGPAQ RSAKRKSKNQ FMGIRQRSRA RWGAEIRDPI KGVRLWLGTF NSAEEAARAY 60 NVEARRIHGK KAKINFPEEP KLPQKSRAPP ASPKVPKPSA AQEHSFIPAF NNLVNQNAFV 120 YPSAHFASKQ QLVQPENVPF VPPMSTIAPV EAPVMNMYSD RGSNSFGFSK LGWKYHTKTP 180 DISSIAPIST IAEGAEPVLV ENNTYNSLVP PVMENNVVNF EPWMRYLMDD SVDEMIDSLL 240 NFDVPRDVVS NRTFGASMPC PSVANFSEGS KPCI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 1e-132 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 2e-95 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3B6PS59 | 0.0 | A0A3B6PS59_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BL_A8D141E69.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-27 | ERF family protein |