PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_9DC9A9192.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 842aa    MW: 90283.2 Da    PI: 9.6743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_9DC9A9192.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-08126170244
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                            ++WT++Ed  l  +v++ G g+W  I r+ +   +Rt  q+  rw
  Traes_6BL_9DC9A9192.2 126 KAWTKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 170
                            68*******************************99**99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-11119177IPR009057Homeodomain-like
PROSITE profilePS5129415.508120178IPR017930Myb domain
SuperFamilySSF466892.73E-11123176IPR009057Homeodomain-like
SMARTSM007178.7E-7124176IPR001005SANT/Myb domain
PfamPF002491.1E-6126170IPR001005SANT/Myb domain
CDDcd116601.49E-12131175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MTSSRTSRTA APSHWGDESD LECEIEPSPK PSNEAAAEAS RFAKILMYGP SREQGSSHRA  60
NSDVPLLNTP NEKIPRVSSD KQLAQSHRLT NGTGPVSNSK QAPHTGLSPD SFDGNGPHNK  120
KTKKTKAWTK DEDAELMAGV HKCGEGNWLD ILRKYNFDST RTYGQLSQRW AVISKRQATT  180
KPAKAKPVTG GYDMKATQKA FFMALDMPMG KPGGLSTLRS GASQQSTQHS APVFGAAAPE  240
LKSATSSSFS LPVPVPSAAP GVVSAQVQVQ PPRVQQAPPQ AAPSKVSNAS IKSRNSSKKQ  300
TAQANPTNAP SSIQAAAIAA GGRIATASIA TNLLKAAQSP QAVHIRSRGK GSSKTSTSSK  360
ASTMAGEPGT QTGSAQHPEL LNCSAPTPSP TVLITQSTEQ VNVVPEVAGV NPPEQSASAH  420
LLEPDRTLST TPVPGPCDNM EIDDDSTFCV VTMEDLFPED VKQPETVSQP EMVRQPETVR  480
PPETVSQPEM VRQSETVRQP EMVKQPEMVD PKAEEMIDPK DADMLEFDRF VAQGCLTTDY  540
SDKSKGVKIA PGAQGATASQ KKKQLPTVGK SIPVFRAPVI MKKTKALASH GATLASTVTS  600
SGLVGTGNAG VLSKAIYRKP AGPGTTGKQN RCQEIMAQKQ HAINSNSSAM ARNAAPGTGT  660
PARNVAAGVG APARNAAPXX XXXXXXXXXX XXXXXXXXXX XXWNTSQEHS SCHWNTTSQE  720
YGSWHWNTTS QEHGSRHWNT TSQEHGSWHW NTTGQELGSR HSNTTSQEHG SRHCNTTGQE  780
LAHRHRNTTG QELAHRHSYT TGQELAHRHR NTTSQECGSC HRSTTSQELA YRHRNTTSHS  840
PT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708180.0AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186656.10.0mucin-5AC-like isoform X1
TrEMBLA0A446WP380.0A0A446WP38_TRITD; Uncharacterized protein
TrEMBLA0A446WP510.0A0A446WP51_TRITD; Uncharacterized protein
STRINGTraes_6BL_9DC9A9192.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-15MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]