PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_99F790D57.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 149aa    MW: 16945.4 Da    PI: 9.7713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_99F790D57.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97.4e-48101451126
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrF P+deelv++yL+ kv+++ ++   + ++ evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkat
  Traes_6BL_99F790D57.1  10 LPPGFRFYPSDEELVCHYLHGKVANQCFTGgaTGTMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKAT 97 
                            79************************965511346***************87788999****************************** PP

                    NAM  87 gkdkevlsk........kgelvglkktLvfykgrapkgektdWvmhey 126
                            gkd+ ++s         + + vg++ktLvf++grap+g+kt Wvmhe 
  Traes_6BL_99F790D57.1  98 GKDRVIHSPrssssvsgHAAIVGMRKTLVFHRGRAPNGTKTCWVMHEL 145
                            *******99655555444444*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-517146IPR003441NAC domain
PROSITE profilePS5100548.5310149IPR003441NAC domain
PfamPF023651.0E-2611145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGLRDIEMML PPGFRFYPSD EELVCHYLHG KVANQCFTGG ATGTMVEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIHSPRSSS SVSGHAAIVG  120
MRKTLVFHRG RAPNGTKTCW VMHELSRTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-4211447142NAC domain-containing protein 19
3swm_B3e-4211447142NAC domain-containing protein 19
3swm_C3e-4211447142NAC domain-containing protein 19
3swm_D3e-4211447142NAC domain-containing protein 19
3swp_A3e-4211447142NAC domain-containing protein 19
3swp_B3e-4211447142NAC domain-containing protein 19
3swp_C3e-4211447142NAC domain-containing protein 19
3swp_D3e-4211447142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-180AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173052.18e-92NAC domain-containing protein 76-like
SwissprotQ9FLJ24e-54NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6PUK91e-108A0A3B6PUK9_WHEAT; Uncharacterized protein
STRINGTraes_6BL_99F790D57.11e-109(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-56NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]