PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_972224088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 149aa MW: 15699.2 Da PI: 4.7651 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 114.8 | 1.1e-35 | 2 | 148 | 91 | 240 |
GRAS 91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172 l+f+++ta qa+l++++ + +++H+iDfd++ G+QW+++lq+La R+ p l++T+++s +s++ el+ t+++L++fA+ l Traes_6BL_972224088.1 2 LQFANFTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAADL 89 89************988776699************************976544599******************************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 g+pfefn++ +l+++++ eL + +E +aV+l + +l+ +L+lvk+l Pk+vv Traes_6BL_972224088.1 90 GIPFEFNAV---SLDAFSPAELISPTgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVV 148 ********8...99********666689********9777665...55555....*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.307 | 1 | 149 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-33 | 2 | 148 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MLQFANFTAT QALLDEIACS AASCIHVIDF DLGVGGQWAS FLQELAHRRG TGGVALPLLK 60 LTAFVSDASH HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS PTGDEIVAVS 120 LPVGCSARAP PLAVILRLVK QLGPKIVVA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371946 | 0.0 | AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185793.1 | 5e-96 | scarecrow-like protein 6 | ||||
TrEMBL | M7YZX0 | 1e-101 | M7YZX0_TRIUA; Uncharacterized protein | ||||
STRING | Traes_6BL_972224088.1 | 1e-103 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 6e-29 | GRAS family protein |
Publications ? help Back to Top | |||
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