PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_948834CD4.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 92aa MW: 10349.7 Da PI: 8.486 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.4e-05 | 43 | 80 | 9 | 50 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 + RR+ri +++ L+el+P + +k Ka +L + ++Y Traes_6BL_948834CD4.2 43 MQVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINY 80 678******************9....4559999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.743 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 44 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-8 | 44 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
GRPRTATASP NGYIDYRSIV VQTAIKPCVT TCMTQFDLVA HMMQVRRERI SERMRYLQEL 60 VPGCDKVTGK AGMLDEIINY XHQPPADSAS LM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360238 | 8e-47 | AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05. | |||
GenBank | AK360620 | 8e-47 | AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A446WIE8 | 2e-26 | A0A446WIE8_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446WIF1 | 2e-26 | A0A446WIF1_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_948834CD4.2 | 1e-62 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 3e-18 | cryptochrome-interacting basic-helix-loop-helix 1 |
Publications ? help Back to Top | |||
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