PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BL_882745936.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 407aa MW: 47594.4 Da PI: 10.0306

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BL_882745936.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.3e-20	11	95	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn+YA ++GF v++ +++k+ + ++ C+++ k + ++ +++r++++ ++t+C+ak+ vk+ +g+w+++ +++eHnH+l Traes_6BL_882745936.1 11 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNHPL 93 69*****************9......4677**9988755543799999**************.9*************9 PP FAR1 90 ap 91 +p Traes_6BL_882745936.1 94 SP 95 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-19	11	95	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-30	217	307	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MKFPTLEDAH EYYNTYALQT GFVVVRGRNY KRQRFQLDCN RNRKVKLVED LNLKRKRKKN 60 VIEKTNCQAK IIVKLIKGEW VIAAVQNEHN HPLSPSRSFT RFLTSQKHMS PEERSFSRVL 120 QQSRVPPGEI LKILRRMSGF FRELPSKEKQ ALILQSAEQW RKANIDVEKT LNHLEELQLQ 180 DPCFFYTVQK DEDGMLRSIF WTDARSRMDY EIFGDFVSFD TTFSTNRHNM PFVPITGMNN 240 RGRTIVLGCA LLQDRKAETY KWMLQTFLQE MGGGQTPRSV ITSQDEAMAK AIAEVMPQAR 300 HRFCRWNGKA QEKMAAFVAA RGNMKAELDI LVDNSLTETE FEQGWSALIQ RHDASENEYL 360 QLLWEMRKTW APVYFMQDFF PFVVSARGSQ GAFSLFKENV LPXPRTR

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MKFPTLEDAH EYYNTYALQT GFVVVRGRNY KRQRFQLDCN RNRKVKLVED LNLKRKRKKN  60
VIEKTNCQAK IIVKLIKGEW VIAAVQNEHN HPLSPSRSFT RFLTSQKHMS PEERSFSRVL  120
QQSRVPPGEI LKILRRMSGF FRELPSKEKQ ALILQSAEQW RKANIDVEKT LNHLEELQLQ  180
DPCFFYTVQK DEDGMLRSIF WTDARSRMDY EIFGDFVSFD TTFSTNRHNM PFVPITGMNN  240
RGRTIVLGCA LLQDRKAETY KWMLQTFLQE MGGGQTPRSV ITSQDEAMAK AIAEVMPQAR  300
HRFCRWNGKA QEKMAAFVAA RGNMKAELDI LVDNSLTETE FEQGWSALIQ RHDASENEYL  360
QLLWEMRKTW APVYFMQDFF PFVVSARGSQ GAFSLFKENV LPXPRTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	59	LKRKRKKN
2	54	58	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146870.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A446WST5	0.0	A0A446WST5_TRITD; Uncharacterized protein
STRING	Traes_6BL_882745936.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-60	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]