PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_868408DFC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19129.7 Da PI: 7.5072 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5.1e-13 | 112 | 157 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s +++L +Ave+Ik Lq Traes_6BL_868408DFC.1 112 SIAERERRTRISDKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 157 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.361 | 106 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-16 | 109 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-13 | 110 | 161 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.5E-15 | 111 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-13 | 112 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 112 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
ASPXXXXXXX ISEGASLFPG AAAHPGGEHP VSRSFSASGS SGGFSIVGPW DESREIIGTL 60 DLGGYESQFS GMASSSSLEL AGMDKYMQAQ QQQDQVAFKV RAKRGCATHP RSIAERERRT 120 RISDKLRKLQ DLVPNMDKQT STSDMLDLAV EHIKGLQSQL QAMKHEQDKC TCCNKP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249954 | 0.0 | AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165844.1 | 1e-94 | transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 3e-42 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A3B6PMA8 | 1e-118 | A0A3B6PMA8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WDN0 | 1e-118 | A0A446WDN0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446WDR9 | 1e-118 | A0A446WDR9_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_868408DFC.1 | 1e-121 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11531 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 8e-41 | bHLH family protein |
Publications ? help Back to Top | |||
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