PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6BL_7E2D1D34C.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 395aa MW: 43778.1 Da PI: 7.0262 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.8e-13 | 75 | 118 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++eE + l + ++++G ++W +a+ ++ gR++ qc+ rw+ Traes_6BL_7E2D1D34C.3 75 RVKWSEEENKVLTQMINKHGLKNWQMVAHAIP-GRSAPQCRQRWR 118 789*****************************.***********8 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 127 | 169 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W+ ++++ gRt +k++w+ Traes_6BL_7E2D1D34C.3 127 KEAWSEQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGAIKEYWR 169 579*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.701 | 70 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-12 | 74 | 123 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.54E-24 | 75 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 77 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-12 | 77 | 118 | No hit | No description |
Pfam | PF13921 | 4.4E-12 | 78 | 138 | No hit | No description |
PROSITE profile | PS51294 | 18.2 | 122 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-10 | 126 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.29E-10 | 129 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-16 | 131 | 177 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MSRIGDLMPR ERSVKSTSHS RKADGNSANV SGTPHDIAKH CHDEELGNIG GKLCKNDGHS 60 FKESCSITNS EVLTRVKWSE EENKVLTQMI NKHGLKNWQM VAHAIPGRSA PQCRQRWRYK 120 IDSAINKEAW SEQEELRLIR AHQIYGTKWR EMVKHFPGRT NGAIKEYWRG PMKRKLNSYL 180 SSGLLEQFPD ILENLSGTQN NSLDILKGTK VSDILNDTEG LSERNEMSSA VPRISISEVS 240 FTEVGENADV PGGESADFMY ARVASAKAPE NIIARSEQHA KTRRKLDLLS SPVELKSSSH 300 EVNSQRPLQQ REQMSPAVGG VSPSNGCHDV LPKILSECAK PVLSSTGSYQ PSDVHSAGTS 360 DPCSLELDIS DLMEMSYFDN LLIFPPGSPH DGNSI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 73 | 178 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF951905 | 0.0 | JF951905.1 Triticum aestivum clone TaMYB22 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172077.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172078.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172079.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172080.1 | 0.0 | transcriptional activator Myb-like | ||||
Refseq | XP_020172082.1 | 0.0 | transcriptional activator Myb-like | ||||
TrEMBL | A0A3B6PL66 | 0.0 | A0A3B6PL66_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WCM9 | 0.0 | A0A446WCM9_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_7E2D1D34C.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-38 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
---|---|---|---|
|