PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_6ECA375B9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CO-like
Protein Properties Length: 390aa    MW: 42531.4 Da    PI: 4.7391
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_6ECA375B9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69e-07637536
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                            C+ ++e++ +++C+++   lC +C  + H+ 
  Traes_6BL_6ECA375B9.1  6 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 37
                           6***************************9954 PP
2zf-B_box231.7e-074980536
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                            C+++ ++++   C + ++ lC++C  ++H  
  Traes_6BL_6ECA375B9.1 49 LCDRCASQPAAVRCLEENTSLCQNCDWNGHAA 80
                           7***************************9955 PP
3CCT62.11.8e-21333376144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R  al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Traes_6BL_6ECA375B9.1 333 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 376
                            6789*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-12249IPR000315B-box-type zinc finger
PROSITE profilePS501199.513649IPR000315B-box-type zinc finger
CDDcd000214.77E-6637No hitNo description
PROSITE profilePS501198.8454592IPR000315B-box-type zinc finger
CDDcd000219.02E-54980No hitNo description
SMARTSM003360.255092IPR000315B-box-type zinc finger
PROSITE profilePS5101714.932333375IPR010402CCT domain
PfamPF062032.0E-16333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MIMGALCDFC GEQRPTIYCR SDAASLCLSC DRNVHSANTL SQRHMRTLLC DRCASQPAAV  60
RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS SEELARIWSF DFDAPSAAAE  120
PNCEEGISMM SINDSGVSNH CGAQQDSSLL DMANTSLISD PHTGEKLNTG DEMNLRPLPT  180
HQPAQSVSMA PKVPCVTDDD MFNDGSIYEN FCVDDAGLTF ENYEELFGTP HIQTEQLFDD  240
AGIDSYFGMK EMPAADCNEL KPAQPECSNA VSADSSLCVP ARQAISSISL SFYALTGESN  300
AGDHQDCGVS PLLLTGEPPW LPGPEGSIAS GSRGSALSRY MEKKKRRKFD KKIRYASRKA  360
RADVRKRVKG RFVKAGEAYD YDPLNDTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KKKRR
2342347KKKRRK
3343347KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2526660.0AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173273.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X2
SwissprotQ9LUA91e-113COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3B6PRA40.0A0A3B6PRA4_WHEAT; Uncharacterized protein
STRINGTraes_6BL_6ECA375B9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-94B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]