PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_6AEADC565.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31363.2 Da PI: 4.5032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 22 | 70 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ +g+W+AeIrdps+ r++lg+f +aeeAa+a++ +++++g Traes_6BL_6AEADC565.2 22 FRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEARRIRG 70 8*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-11 | 22 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.93E-32 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 8.8E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MTTAGFDGPA QRSAKRKRKN EFRGIRQRPW GKWAAEIRDP SKGVRVWLGT FNSAEEAARA 60 YDVEARRIRG KKAKVNFPEE PTVPQKRRAC PAAPKVPKSS AAQEPTVIPA VNNLANPNAF 120 VYPSADFASK QPLVQPDNVP FVPAINSAAP VEAPVMNMYS DQGSNSFGCS DLGWEYDTKT 180 PDISSIAPIS TIAEGAETAL LQSNTYNPAV IAEGAESAPV QTNTYNSVVP PVMENNAVDF 240 EPWMRFLLDD GVDEPIDSLL NFDVPQDVVG NMDLWSFDDM PICGEIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 20 | 78 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-20 | 20 | 78 | 4 | 63 | ATERF1 |
3gcc_A | 5e-20 | 20 | 78 | 4 | 63 | ATERF1 |
5wx9_A | 2e-19 | 20 | 80 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 0.0 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-131 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A446WNQ9 | 0.0 | A0A446WNQ9_TRITD; Uncharacterized protein | ||||
STRING | Traes_6BL_6AEADC565.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-34 | ERF family protein |