PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_600E4507F.19
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 408aa    MW: 45340.9 Da    PI: 5.8859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_600E4507F.19genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13210256354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +a+ + E+ RR++iN ++  Lr+llP++     +K++ a+i+  A+eYI++L
  Traes_6BL_600E4507F.19 210 KANFATEKERREQINVKYGALRSLLPSP-----TKNDRASIVGDAIEYINEL 256
                             68999***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.872207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-9208261No hitNo description
PfamPF000101.9E-10210256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-12210267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10214267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MIAEGGYFDG SRDAILMAGS LIHDSLDSIC DSTEIEQGNF HGPSFFIEDI CNPTNLTSES  60
ARTINHIQHR AEFDMDQDLH GHMIQETQIP RYSMTTAFLS TEHIFGDPGQ NAGNQLDINN  120
DVLGRAIHDS GMMLGDSTLP LQYNGNQSHL FKDLYHSLPQ SFGLFSSDDE RDRTMGVVGA  180
AGNILQEIDG RQFGSPKLGR SKKGGFGKAK ANFATEKERR EQINVKYGAL RSLLPSPTKN  240
DRASIVGDAI EYINELNRTL KELTSLVEGD TKHRMKRLKL DDAARDNGES SSLQQVKDDQ  300
DSQLNGAIRS SWIQRRSKEC HVDVRIVGNE INIKFTEKKK TNSLLCAAKV IDEFRLELIH  360
VVGGIIGDQR IFMFNTKISE GSSVYASALA SKLLRAMEME HLAVDIFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3576691e-109AK357669.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1058O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146715.10.0transcription factor EAT1-like
SwissprotQ7X8R01e-142EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A3B6PME80.0A0A3B6PME8_WHEAT; Uncharacterized protein
TrEMBLA0A446WI100.0A0A446WI10_TRITD; Uncharacterized protein
STRINGTraes_6BL_600E4507F.190.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-48bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]