PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BL_5AA3D02B3.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 231aa MW: 25344.7 Da PI: 7.0704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BL_5AA3D02B3.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.9e-05	12	28	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++L A+eY+k+Lq Traes_6BL_5AA3D02B3.2 12 DKASMLDDAIEYLKHLQ 28 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-7	10	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-4	10	32	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.8E-7	10	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAGAGGGWLQ TDKASMLDDA IEYLKHLQLQ VQMLSMRNGV YRPSVNLPGA PDHLPTSQMC 60 AALNQNSVDA SSNRPAAMLP MSHFLGAMSG TRHPFGPPNQ DRPRHEPLVL SSVPCTTTRE 120 PPFLLGPSQE SPLRSLQLTL PAEMIFQEEA MLKHRLSSTQ ETTSMPVGHE IKQPVRQETP 180 AERAGHFDAC SIWKNQSHDM TPNNPESVLF APHFRRFGSG TADSGLRAES K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360656	0.0	AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165312.1	1e-138	transcription factor SPATULA-like isoform X1
TrEMBL	A0A446WR18	1e-162	A0A446WR18_TRITD; Uncharacterized protein
STRING	Traes_6BL_5AA3D02B3.2	1e-171	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-12	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]